removed read.dist, read.otu, read.tree and globaldata. added current to defaults...

[mothur.git] / listseqscommand.h

diff --git a/listseqscommand.h b/listseqscommand.h
index 889b3733df47f346be5a3fd9dd327a0660913c61..bd7beae73360da9453911e7d5b755135a00f4d54 100644 (file)
--- a/listseqscommand.h
+++ b/listseqscommand.h
@@ -19,16 +19,18 @@ class ListSeqsCommand : public Command {
                ListSeqsCommand(string);
                ListSeqsCommand();      
                ~ListSeqsCommand(){}
-               vector<string> getRequiredParameters();
-               vector<string> getValidParameters();
-               vector<string> getRequiredFiles();
-               map<string, vector<string> > getOutputFiles() { return outputTypes; }
-               int execute();
-               void help();    
-               
+       
+               vector<string> setParameters();
+               string getCommandName()                 { return "get.seqs";                            }
+               string getCommandCategory()             { return "Sequence Processing";         }
+               string getHelpString(); 
+       
+               int execute(); 
+               void help() { m->mothurOut(getHelpString()); }  
+       
+       
        private:
                vector<string> names, outputNames;
-               map<string, vector<string> > outputTypes;
                string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile, taxfile;
                bool abort;