added count file to trim.seqs, get.groups, get.lineage, get.seqs, heatmap.sim, list...

[mothur.git] / listseqscommand.h

diff --git a/listseqscommand.h b/listseqscommand.h
index 1a31a6dd432e837159be8d916f7ce2a25e4d4dec..8e4cce3c932100ff1ab88d49b346ff87e7791a06 100644 (file)
--- a/listseqscommand.h
+++ b/listseqscommand.h
@@ -34,7 +34,7 @@ class ListSeqsCommand : public Command {
        
        private:
                vector<string> names, outputNames;
-               string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile, taxfile;
+               string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile;
                bool abort;
                
                int readFasta();
@@ -43,6 +43,7 @@ class ListSeqsCommand : public Command {
                int readAlign();
                int readList();
                int readTax();
+        int readCount();
                
 };