1.19.0

[mothur.git] / listseqscommand.cpp

diff --git a/listseqscommand.cpp b/listseqscommand.cpp
index 21cb4c7f622e95bc4a44689ce8ef605703444ec2..d60470cdebcc70114afcb79cc08edbb333816292 100644 (file)
--- a/listseqscommand.cpp
+++ b/listseqscommand.cpp
@@ -257,11 +257,11 @@ int ListSeqsCommand::readFasta(){
                m->openInputFile(fastafile, in);
                string name;
                
-               ofstream out;
-               string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
-               m->openOutputFile(newFastaName, out);
-               int count = 1;
-               string lastName = "";
+               //ofstream out;
+               //string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
+               //m->openOutputFile(newFastaName, out);
+               //int count = 1;
+               //string lastName = "";
                
                while(!in.eof()){
                        
@@ -269,20 +269,20 @@ int ListSeqsCommand::readFasta(){
                        
                        Sequence currSeq(in);
                        name = currSeq.getName();
-                       if (lastName == "") { lastName = name; }
-                       if (name != lastName) { count = 1; }
-                       lastName = name;
+                       //if (lastName == "") { lastName = name; }
+                       //if (name != lastName) { count = 1; }
+               //      lastName = name;
                        
-                       Sequence newSeq(name+"_"+toString(count), currSeq.getAligned());
-                       newSeq.printSequence(out);
+                       //Sequence newSeq(name+"_"+toString(count), currSeq.getAligned());
+                       //newSeq.printSequence(out);
                        
                        if (name != "") {  names.push_back(name);  }
                        
                        m->gobble(in);
-                       count++;
+                       //count++;
                }
                in.close();     
-               out.close();
+               //out.close();
                
                return 0;