changed random forest output filename

[mothur.git] / listseqscommand.cpp

diff --git a/listseqscommand.cpp b/listseqscommand.cpp
index 8a1effeb7deaf02f6931633f1abfc41f355a9957..cf884705cb26f341ef08713b118af32fd49c5bdf 100644 (file)
--- a/listseqscommand.cpp
+++ b/listseqscommand.cpp
@@ -297,7 +297,7 @@ int ListSeqsCommand::readFasta(){
                //ofstream out;
                //string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
                //m->openOutputFile(newFastaName, out);
-               //int count = 1;
+               int count = 1;
                //string lastName = "";
                
                while(!in.eof()){
@@ -310,7 +310,7 @@ int ListSeqsCommand::readFasta(){
                        if (name != "") {  names.push_back(name);  }
                        
                        m->gobble(in);
-                       //count++;
+                       if (m->debug) { count++; cout << "[DEBUG]: count = " + toString(count) + ", name = " + currSeq.getName() + "\n"; }
                }
                in.close();     
                //out.close();
@@ -415,7 +415,7 @@ int ListSeqsCommand::readGroup(){
 int ListSeqsCommand::readCount(){
        try {
                CountTable ct;
-               ct.readTable(countfile);
+               ct.readTable(countfile, false);
         
         if (m->control_pressed) { return 0; }