ofstream out;
m->openOutputFile(outputFileName, out);
+ outputNames.push_back(outputFileName); outputTypes["accnos"].push_back(outputFileName);
//output to .accnos file
for (int i = 0; i < names.size(); i++) {
out.close();
if (m->control_pressed) { outputTypes.clear(); remove(outputFileName.c_str()); return 0; }
-
+
+ m->setAccnosFile(outputFileName);
+
m->mothurOutEndLine();
m->mothurOut("Output File Name: "); m->mothurOutEndLine();
- m->mothurOut(outputFileName); m->mothurOutEndLine(); outputNames.push_back(outputFileName); outputTypes["accnos"].push_back(outputFileName);
+ m->mothurOut(outputFileName); m->mothurOutEndLine();
m->mothurOutEndLine();
+ //set accnos file as new current accnosfile
+ string current = "";
+ itTypes = outputTypes.find("accnos");
+ if (itTypes != outputTypes.end()) {
+ if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setAccnosFile(current); }
+ }
+
return 0;
}