fixed memory leak of groupmap in reads

[mothur.git] / libshuffcommand.cpp

diff --git a/libshuffcommand.cpp b/libshuffcommand.cpp
index 2ed7ee5089691c5bf02e3e39589b2dc04cc5426f..9ab9108f23ca4d63c3479bb8c6a27d27e08704ea 100644 (file)
--- a/libshuffcommand.cpp
+++ b/libshuffcommand.cpp
@@ -72,6 +72,8 @@ int LibShuffCommand::execute(){
        try {
                //deltaValues[0] = scores for the difference between AA and AB.
                //cValues[0][0][0] = AA at distance 0.0, cValues[0][0][1] = AB at distance 0.0, cValues[0][0][2] = AC at distance 0.0, cValues[0][1][0] = BA at distance 0.0, cValues[0][1][1] = BB...
+               Progress* reading;
+               reading = new Progress("Comparing to random:", iters);
                
                sumDelta.resize(numComp-numGroups, 0.0);
                
@@ -153,6 +155,7 @@ int LibShuffCommand::execute(){
                        }
 //cout << "iter " << m << endl;
                        //clear out old Values
+                       reading->update(m);
                        cValues.clear();
                        
 //cout << "random sum delta for iter " << m << endl;
@@ -163,6 +166,8 @@ int LibShuffCommand::execute(){
 
                }
                
+               reading->finish();
+               delete reading;
                                
                /**********************************************************/
                //find the signifigance of the user matrix' sumdelta values