1.23.0

[mothur.git] / libshuffcommand.cpp

diff --git a/libshuffcommand.cpp b/libshuffcommand.cpp
index 1e8102f49f40753d239f8188f1a88cc9e3578587..1d1d41fadb4ca36994cefa4dc1c2d608126a93b1 100644 (file)
--- a/libshuffcommand.cpp
+++ b/libshuffcommand.cpp
@@ -170,13 +170,13 @@ LibShuffCommand::LibShuffCommand(string option)  {
                                
                        string temp;
                        temp = validParameter.validFile(parameters, "iters", false);                            if (temp == "not found") { temp = "10000"; }
-                       convert(temp, iters); 
+                       m->mothurConvert(temp, iters); 
                        
                        temp = validParameter.validFile(parameters, "cutoff", false);                           if (temp == "not found") { temp = "1.0"; }
-                       convert(temp, cutOff); 
+                       m->mothurConvert(temp, cutOff); 
                        
                        temp = validParameter.validFile(parameters, "step", false);                             if (temp == "not found") { temp = "0.01"; }
-                       convert(temp, step); 
+                       m->mothurConvert(temp, step); 
                        
                        temp = validParameter.validFile(parameters, "sim", false);                              if (temp == "not found") { temp = "F"; }
                        sim = m->isTrue(temp);