fixes while testing

[mothur.git] / libshuffcommand.cpp

diff --git a/libshuffcommand.cpp b/libshuffcommand.cpp
index e48cf33d7dd4a60405841e124a35c5250f76bd86..e7fb357b9bd3028fcbd32bf388af9bbb9b4c2847 100644 (file)
--- a/libshuffcommand.cpp
+++ b/libshuffcommand.cpp
@@ -33,6 +33,7 @@ vector<string> LibShuffCommand::getValidParameters(){
 //**********************************************************************************************************************
 LibShuffCommand::LibShuffCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["coverage"] = tempOutNames;