moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / libshuff.h

diff --git a/libshuff.h b/libshuff.h
deleted file mode 100644 (file)
index ef0e1b0..0000000
--- a/libshuff.h
+++ /dev/null
@@ -1,48 +0,0 @@
-#ifndef LIBSHUFF
-#define LIBSHUFF
-
-/*
- *  libshuff.h
- *  Mothur
- *
- *  Created by Pat Schloss on 4/8/09.
- *  Copyright 2009 Patrick D. Schloss. All rights reserved.
- *
- */
-
-#include "fullmatrix.h"
-
-class Libshuff {
-       
-public:
-       Libshuff(FullMatrix*, int, float, float);
-       virtual vector<vector<double> > evaluateAll() = 0;
-       virtual float evaluatePair(int,int) = 0;
-       void randomizeGroups(int, int);
-       void resetGroup(int);
-       vector<vector<vector<double> > > getSavedMins();
-
-protected:
-       void initializeGroups(FullMatrix*);
-       vector<double> getMinX(int);
-       vector<double> getMinXY(int, int);
-       
-       vector<vector<vector<double> > > savedMins;
-       
-       
-       FullMatrix* matrix;
-       vector<int> groupSizes;
-       vector<string> groupNames;
-       vector<vector<int> > groups;
-       vector<vector<int> > savedGroups;
-       vector<double> minX;
-       vector<double> minXY;
-       float cutOff;
-       int iters;
-       float stepSize;
-       
-       int numGroups;
-       MothurOut* m;
-};
-
-#endif