added logfile feature

[mothur.git] / libshuff.cpp

diff --git a/libshuff.cpp b/libshuff.cpp
index b7e5f27007f4fe33fd2e4d43ff8ea50a2399c130..002cd52d2aff36d8ac70d4ed9b919d8a8d0a2033 100644 (file)
--- a/libshuff.cpp
+++ b/libshuff.cpp
@@ -24,14 +24,9 @@ Libshuff::Libshuff(FullMatrix* D, int it, float step, float co) : matrix(D), ite
                initializeGroups(matrix);
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Libshuff class Function Libshuff. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Libshuff", "Libshuff");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Libshuff class function Libshuff. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
-       
 }
 
 /***********************************************************************/
@@ -54,14 +49,9 @@ void Libshuff::initializeGroups(FullMatrix* matrix){
                }
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Libshuff class Function initializeGroups. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Libshuff", "initializeGroups");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Libshuff class function initializeGroups. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
-       
 }
 
 /***********************************************************************/
@@ -87,14 +77,9 @@ vector<double> Libshuff::getMinX(int x){
                return minX;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Libshuff class Function getMinX. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Libshuff", "getMinX");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Libshuff class function getMinX. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
-       
 }
 
 /***********************************************************************/
@@ -113,13 +98,9 @@ vector<double> Libshuff::getMinXY(int x, int y){
                return minXY;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Libshuff class Function getMinXY. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Libshuff", "getMinXY");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Libshuff class function getMinXY. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/
@@ -143,13 +124,9 @@ void Libshuff::randomizeGroups(int x, int y){
                for(int k=0;k<groupSizes[y];k++)        {       groups[y][k]=v[index++];        }
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the Libshuff class Function randomizeGroups. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "Libshuff", "randomizeGroups");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the Libshuff class function randomizeGroups. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }       
 }
 
 /***********************************************************************/