added modify names parameter to set.dir

[mothur.git] / kruskalwalliscommand.h

diff --git a/kruskalwalliscommand.h b/kruskalwalliscommand.h
index 0fa8b683f25397173fc747d5edf0a276508ca72e..feefebd58fdb5650f41e9642a63e6dc68d011a24 100644 (file)
--- a/kruskalwalliscommand.h
+++ b/kruskalwalliscommand.h
@@ -24,7 +24,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "kruskalwallis";                       }
        string getCommandCategory()             { return "Hypothesis Testing";  }
-       string getOutputFileNameTag(string, string);
+    string getOutputPattern(string);   
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/kruskalwallis"; }
        string getDescription()         { return "Non-parametric method for testing whether samples originate from the same distribution."; }
@@ -38,13 +38,14 @@ public:
     int execute(); 
        void help() { m->mothurOut(getHelpString()); }
     void assignRank(vector<groupRank>&);
+    void assignValue(vector<groupRank>&);
     
     
 private:
-    string outputDir, sharedfile;
+    string outputDir, sharedfile, groups;
     bool abort;
     set<string> labels;
-    vector<string> outputNames;
+    vector<string> outputNames, Groups;
     vector<int> counts;
     vector<double> rankSums;
     vector<double> rankMeans;