moved utilities out of mothur.h and into mothurOut class.

[mothur.git] / kmerdb.cpp

diff --git a/kmerdb.cpp b/kmerdb.cpp
index bd5b9762b41dbc63e116172ad00e419755fdbbf1..29265933d8c22ea32c1f943a877b3b6cf62ccfe0 100644 (file)
--- a/kmerdb.cpp
+++ b/kmerdb.cpp
@@ -107,7 +107,7 @@ void KmerDB::generateDB(){
        try {
                
                ofstream kmerFile;                                                                              //      once we have the kmerLocations folder print it out
-               openOutputFile(kmerDBName, kmerFile);                                   //      to a file
+               m->openOutputFile(kmerDBName, kmerFile);                                        //      to a file
                
                //output version
                kmerFile << m->getVersion() << endl;
@@ -160,7 +160,7 @@ void KmerDB::readKmerDB(ifstream& kmerDBFile){
                kmerDBFile.seekg(0);                                                                    //      start at the beginning of the file
                
                //read version
-               string line = getline(kmerDBFile); gobble(kmerDBFile);
+               string line = m->getline(kmerDBFile); m->gobble(kmerDBFile);
                
                string seqName;
                int seqNumber;