working on pam

[mothur.git] / kmer.hpp

diff --git a/kmer.hpp b/kmer.hpp
index 31ca9fb4b7442a03757fc7893efa201a7d3f24be..9a3c5a0091b868b7f61ae8043546f39b27e212cb 100644 (file)
--- a/kmer.hpp
+++ b/kmer.hpp
@@ -21,7 +21,8 @@ public:
        string getKmerString(string);
        int getKmerNumber(string, int);
        string getKmerBases(int);
-       
+       int getReverseKmerNumber(int);
+       vector< map<int, int> > getKmerCounts(string sequence);  //for use in chimeraCheck
        
 private:
        char getASCII(int);