paralellized the indicator command

[mothur.git] / indicatorcommand.h

diff --git a/indicatorcommand.h b/indicatorcommand.h
index aa3156298a1a729f416bb793e60b7739c39843d1..c5112e683dbf78a074aa1df6c1978d3b1fb0756d 100644 (file)
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -39,7 +39,7 @@ private:
        GroupMap* designMap;
        string treefile, sharedfile, relabundfile, groups, label, inputFileName, outputDir, designfile;
        bool abort;
-       int iters;
+       int iters, processors;
        vector<string> outputNames, Groups;
        vector<SharedRAbundVector*> lookup;
        vector<SharedRAbundFloatVector*> lookupFloat;
@@ -54,6 +54,11 @@ private:
        map<int, float> getDistToRoot(Tree*&);
        map< vector<int>, vector<int> > randomizeGroupings(vector< vector<SharedRAbundVector*> >&, int);
        map< vector<int>, vector<int> > randomizeGroupings(vector< vector<SharedRAbundFloatVector*> >&, int);
+       vector<float> driver(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >, int, vector<float>, int);
+       vector<float> driver(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >, int, vector<float>, int);
+       vector<float> getPValues(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >, int, vector<float>);
+       vector<float> getPValues(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >, int, vector<float>);
+
        
 };