changed added group output to indicator command. a few changes to work with the guy

[mothur.git] / indicatorcommand.h

diff --git a/indicatorcommand.h b/indicatorcommand.h
index 3c24dfb843e770567a1486436536b97fabfe12b5..b058af33b05b2a7a29f3f1e4aede4e22c37cbf7d 100644 (file)
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -50,13 +50,16 @@ private:
        int GetIndicatorSpecies(Tree*&);
        int GetIndicatorSpecies();
        set<string> getDescendantList(Tree*&, int, map<int, set<string> >, map<int, set<int> >&);
-       vector<float> getValues(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >);
-       vector<float> getValues(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >);
+       vector<float> getValues(vector< vector<SharedRAbundVector*> >&, vector<string>&, map< vector<int>, vector<int> >);
+       vector<float> getValues(vector< vector<SharedRAbundFloatVector*> >&, vector<string>&, map< vector<int>, vector<int> >);
+    
        map<int, float> getDistToRoot(Tree*&);
        map< vector<int>, vector<int> > randomizeGroupings(vector< vector<SharedRAbundVector*> >&, int);
        map< vector<int>, vector<int> > randomizeGroupings(vector< vector<SharedRAbundFloatVector*> >&, int);
+    
        vector<float> driver(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >, int, vector<float>, int);
        vector<float> driver(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >, int, vector<float>, int);
+    
        vector<float> getPValues(vector< vector<SharedRAbundFloatVector*> >&, map< vector<int>, vector<int> >, int, vector<float>);
        vector<float> getPValues(vector< vector<SharedRAbundVector*> >&, map< vector<int>, vector<int> >, int, vector<float>);