major change to the tree class to use the count table class instead of tree map....

[mothur.git] / indicatorcommand.h

diff --git a/indicatorcommand.h b/indicatorcommand.h
index 2c36c35f6f3025bb3f07760055512b2e0e257914..3c24dfb843e770567a1486436536b97fabfe12b5 100644 (file)
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -12,7 +12,7 @@
 
 #include "command.hpp"
 #include "readtree.h"
-#include "treemap.h"
+#include "counttable.h"
 #include "sharedrabundvector.h"
 #include "sharedrabundfloatvector.h"
 #include "inputdata.h"
@@ -36,7 +36,7 @@ public:
        
 private:
        ReadTree* read;
-       TreeMap* treeMap;
+       CountTable* ct;
        GroupMap* designMap;
        string treefile, sharedfile, relabundfile, groups, label, inputFileName, outputDir, designfile;
        bool abort;