sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / indicatorcommand.h

diff --git a/indicatorcommand.h b/indicatorcommand.h
index b058af33b05b2a7a29f3f1e4aede4e22c37cbf7d..1f46081dd464c32e599cf1d173d1eba60df3db46 100644 (file)
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -26,8 +26,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "indicator";                           }
        string getCommandCategory()             { return "Hypothesis Testing";          }
-       string getOutputFileNameTag(string, string);
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "Dufrene M, Legendre P (1997). Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecol Monogr 67: 345-66.\n McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Indicator"; }
        string getDescription()         { return "calculate the indicator value for each OTU"; }