added command descriptions

[mothur.git] / indicatorcommand.h

diff --git a/indicatorcommand.h b/indicatorcommand.h
index 578aa95cbd6ebd773e6595c875ef487fe4a6861b..00694bea297688fc57804fc4ab41b61287e798d0 100644 (file)
--- a/indicatorcommand.h
+++ b/indicatorcommand.h
@@ -28,7 +28,8 @@ public:
        string getCommandCategory()             { return "Hypothesis Testing";          }
        string getHelpString(); 
        string getCitation() { return "Dufrene M, Legendre P (1997). Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecol Monogr 67: 345-66.\n McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Indicator"; }
-       
+       string getDescription()         { return "calculate the indicator value for each OTU for each tree node"; }
+
        int execute();
        void help() { m->mothurOut(getHelpString()); }