added set.current and get.current commands and modified existing commands to update...

[mothur.git] / indicatorcommand.cpp

diff --git a/indicatorcommand.cpp b/indicatorcommand.cpp
index 239a4bc65d7d80ddf6322eca0188550068cf758f..654ec066f7610ae4def19f745c28512a71d3b196 100644 (file)
--- a/indicatorcommand.cpp
+++ b/indicatorcommand.cpp
@@ -325,6 +325,13 @@ int IndicatorCommand::execute(){
                        delete outputTree; delete globaldata->gTreemap;  return 0; 
                }
                
+               //set tree file as new current treefile
+               string current = "";
+               itTypes = outputTypes.find("tree");
+               if (itTypes != outputTypes.end()) {
+                       if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setTreeFile(current); }
+               }
+               
                m->mothurOutEndLine();
                m->mothurOut("Output File Names: "); m->mothurOutEndLine();
                for (int i = 0; i < outputNames.size(); i++) {  m->mothurOut(outputNames[i]); m->mothurOutEndLine();    }