added load.logfile command. changed summary.single output for subsample=t.

[mothur.git] / helpcommand.h

diff --git a/helpcommand.h b/helpcommand.h
index f6a4aa38570aa047de43839895fc40d30e984fe7..31dbd2b9014ab27a150663a6eff56c63f2f98f8f 100644 (file)
--- a/helpcommand.h
+++ b/helpcommand.h
@@ -18,14 +18,24 @@ class HelpCommand : public Command {
        
 public:
        HelpCommand(string);
-       ~HelpCommand();
-       int execute();
-       void help() {};
+       HelpCommand() {}
+       ~HelpCommand(){}
+       
+       vector<string> setParameters()  { return outputNames;   } //dummy, doesn't really do anything   
+       string getCommandName()                 { return "help";                }
+       string getCommandCategory()             { return "Hidden";              }
+       string getHelpString() { return "For more information about a specific command type 'commandName(help)' i.e. 'cluster(help)'"; }        
+    string getOutputFileNameTag(string, string) { return "";  }
+       string getCitation() { return "no citation"; }
+       string getDescription()         { return "help"; }
+
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
        
-private:
-       CommandFactory* validCommands;
        
 private:
+       CommandFactory* validCommands;
+       vector<string> outputNames;     
                
 };