changes while testing

[mothur.git] / heatmapsimcommand.h

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
index dd6fa2c87bdb2dc79a4ab8b7245143d04925b26d..f421fdc5bf2c3ff8aed22a197afc3309a86b4e34 100644 (file)
--- a/heatmapsimcommand.h
+++ b/heatmapsimcommand.h
@@ -26,7 +26,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "heatmap.sim";                         }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "http://www.mothur.org/wiki/Heatmap.sim"; }
        string getDescription()         { return "generate a heatmap indicating the pairwise distance between multiple samples using a variety of calculators"; }
 
@@ -42,8 +44,9 @@ private:
        OptionParser* parser;
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string format, groups, label, calc, sharedfile, phylipfile, columnfile, namefile, outputDir, inputfile;
+       string format, groups, label, calc, sharedfile, phylipfile, columnfile, countfile, namefile, outputDir, inputfile;
        vector<string> Estimators, Groups, outputNames;
+       int fontsize;
        
        int runCommandShared();
        int runCommandDist();