you can now use a distance matrix as input for the heatmap.sim command.

[mothur.git] / heatmapsimcommand.h

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
index 595f918f442352aea7dd94d6e62065b28398c6ca..49924eb9d3fbe1bca2bd6a8650c0eb9586d98e6f 100644 (file)
--- a/heatmapsimcommand.h
+++ b/heatmapsimcommand.h
@@ -39,8 +39,11 @@ private:
        map<string, string>::iterator it;
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string format, groups, label, calc;
+       string format, groups, label, calc, phylipfile, columnfile, namefile;
        vector<string> Estimators, Groups;
+       
+       int runCommandShared();
+       int runCommandDist();
 
 
 };