added heatmap.sim command and changed heatmap to heatmap.bin

[mothur.git] / heatmapsimcommand.h

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
new file mode 100644 (file)
index 0000000..33696a3
--- /dev/null
+++ b/heatmapsimcommand.h
@@ -0,0 +1,40 @@
+#ifndef HEATMAPSIMCOMMAND_H
+#define HEATMAPSIMCOMMAND_H
+
+/*
+ *  heatmapsimcommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 6/8/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+#include "inputdata.h"
+#include "readotu.h"
+#include "validcalculator.h"
+#include "heatmapsim.h"
+
+class GlobalData;
+
+class HeatMapSimCommand : public Command {
+
+public:
+       HeatMapSimCommand();
+       ~HeatMapSimCommand();
+       int execute();
+       
+private:
+       GlobalData* globaldata;
+       ReadOTUFile* read;
+       InputData* input;
+       vector<SharedRAbundVector*> lookup;
+       vector<Calculator*> heatCalculators;
+       ValidCalculators* validCalculator;
+       HeatMapSim* heatmap;
+
+};
+
+#endif
+