moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / heatmapsimcommand.h

diff --git a/heatmapsimcommand.h b/heatmapsimcommand.h
deleted file mode 100644 (file)
index 74e20be..0000000
--- a/heatmapsimcommand.h
+++ /dev/null
@@ -1,56 +0,0 @@
-#ifndef HEATMAPSIMCOMMAND_H
-#define HEATMAPSIMCOMMAND_H
-
-/*
- *  heatmapsimcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 6/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "validcalculator.h"
-#include "heatmapsim.h"
-#include "nameassignment.hpp"
-
-class HeatMapSimCommand : public Command {
-
-public:
-       HeatMapSimCommand(string);
-       HeatMapSimCommand();
-       ~HeatMapSimCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "heatmap.sim";                         }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Heatmap.sim"; }
-       string getDescription()         { return "generate a heatmap indicating the pairwise distance between multiple samples using a variety of calculators"; }
-
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-       
-private:
-       InputData* input;
-       vector<SharedRAbundVector*> lookup;
-       vector<Calculator*> heatCalculators;
-       HeatMapSim* heatmap;
-       OptionParser* parser;
-       bool abort, allLines;
-       set<string> labels; //holds labels to be used
-       string format, groups, label, calc, sharedfile, phylipfile, columnfile, namefile, outputDir, inputfile;
-       vector<string> Estimators, Groups, outputNames;
-       int fontsize;
-       
-       int runCommandShared();
-       int runCommandDist();
-
-
-};
-
-#endif
-