modified calculators to use doubles, added numotu and fontsize parameters to heatmap...

[mothur.git] / heatmapcommand.h

diff --git a/heatmapcommand.h b/heatmapcommand.h
index edb346021ec9effb6669029e7835be3d98e93e41..f711cc341d6f2247cad50639a393bebaea767e1a 100644 (file)
--- a/heatmapcommand.h
+++ b/heatmapcommand.h
@@ -16,29 +16,33 @@
 #include "readotu.h"
 #include "sharedlistvector.h"
 #include "heatmap.h"
-#include "sharedutilities.h"
-
+#include "rabundvector.hpp"
 
 class GlobalData;
 
-
 class HeatMapCommand : public Command {
 
 public:
-       HeatMapCommand();
+       HeatMapCommand(string);
        ~HeatMapCommand();
        int execute();
+       void help();
        
 private:
        GlobalData* globaldata;
        ReadOTUFile* read;
-       SharedUtil* util;
        InputData* input;
        SharedListVector* SharedList;
-       SharedOrderVector* order;
-       OrderVector* ordersingle;
+       RAbundVector* rabund;
+       vector<SharedRAbundVector*> lookup;
        HeatMap* heatmap;
-       string format;
+
+       bool abort, allLines;
+       set<string> labels; //holds labels to be used
+       string format, groups, sorted, scale, label, outputDir;
+       vector<string> Groups, outputNames;
+       int numOTU, fontSize;
+
 
 };