started heatmap command

[mothur.git] / heatmapcommand.h

diff --git a/heatmapcommand.h b/heatmapcommand.h
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+#ifndef HEATMAPCOMMAND_H
+#define HEATMAPCOMMAND_H
+
+/*
+ *  heatmapcommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 3/25/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+
+#include "command.hpp"
+#include "inputdata.h"
+#include "readmatrix.hpp"
+#include "sharedlistvector.h"
+
+
+class GlobalData;
+
+
+class HeatMapCommand : public Command {
+
+public:
+       HeatMapCommand();
+       ~HeatMapCommand();
+       int execute();
+       
+private:
+       GlobalData* globaldata;
+       ReadMatrix* read;
+       InputData* input;
+       SharedListVector* SharedList;
+       SharedOrderVector* order;
+       OrderVector* ordersingle;
+       string format;
+
+};
+
+#endif
+