moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / heatmapcommand.h

diff --git a/heatmapcommand.h b/heatmapcommand.h
deleted file mode 100644 (file)
index ccd5f48..0000000
--- a/heatmapcommand.h
+++ /dev/null
@@ -1,57 +0,0 @@
-#ifndef HEATMAPCOMMAND_H
-#define HEATMAPCOMMAND_H
-
-/*
- *  heatmapcommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 3/25/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "inputdata.h"
-#include "sharedlistvector.h"
-#include "heatmap.h"
-#include "rabundvector.hpp"
-
-
-class HeatMapCommand : public Command {
-
-public:
-       HeatMapCommand(string);
-       HeatMapCommand();
-       ~HeatMapCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "heatmap.bin";                         }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Heatmap.bin"; }
-       string getDescription()         { return "generate a heatmap where the color represents the relative abundanceof an OTU"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-       
-private:
-       InputData* input;
-       RAbundVector* rabund;
-       vector<SharedRAbundVector*> lookup;
-       vector<SharedRAbundFloatVector*> lookupFloat;
-       HeatMap* heatmap;
-
-       bool abort, allLines;
-       set<string> labels; //holds labels to be used
-       string format, groups, sorted, scale, label, outputDir, sharedfile, relabundfile, listfile, rabundfile, sabundfile, inputfile;
-       vector<string> Groups, outputNames;
-       int numOTU, fontSize;
-
-
-};
-
-#endif
-