changed all shared commands so that they read the shared file generated by the read...

[mothur.git] / heatmapcommand.cpp

diff --git a/heatmapcommand.cpp b/heatmapcommand.cpp
index be25f091516022e5a6414184c7ecb58518e60a94..fd7a8279e689b8226b2939ac8a07656dd290d530 100644 (file)
--- a/heatmapcommand.cpp
+++ b/heatmapcommand.cpp
@@ -40,7 +40,7 @@ HeatMapCommand::~HeatMapCommand(){
 int HeatMapCommand::execute(){
        try {
                int count = 1;  
-               
+       
                if (format == "sharedfile") {
                        //you have groups
                        read = new ReadOTUFile(globaldata->inputFileName);      
@@ -48,14 +48,6 @@ int HeatMapCommand::execute(){
                        
                        input = globaldata->ginput;
                        lookup = input->getSharedRAbundVectors();
-               }else if (format == "shared") {
-                       //you are using a list and a groupfile
-                       read = new ReadOTUFile(globaldata->inputFileName);      
-                       read->read(&*globaldata); 
-               
-                       input = globaldata->ginput;
-                       SharedList = globaldata->gSharedList;
-                       lookup = SharedList->getSharedRAbundVector();
                }else if (format == "list") {
                        //you are using just a list file and have only one group
                        read = new ReadOTUFile(globaldata->inputFileName);