broke apart read matrix file

[mothur.git] / heatmapcommand.cpp

diff --git a/heatmapcommand.cpp b/heatmapcommand.cpp
index bbda2b34f30265115b82d3522e858a6b3cd7d29d..b8b38207277789ae9181e688f5a648e96ffe337c 100644 (file)
--- a/heatmapcommand.cpp
+++ b/heatmapcommand.cpp
@@ -46,14 +46,14 @@ int HeatMapCommand::execute(){
                
                if (format == "sharedfile") {
                        //you have groups
-                       read = new ReadPhilFile(globaldata->inputFileName);     
+                       read = new ReadOTUFile(globaldata->inputFileName);      
                        read->read(&*globaldata); 
                        
                        input = globaldata->ginput;
                        order = input->getSharedOrderVector();
                }else if (format == "shared") {
                        //you are using a list and a groupfile
-                       read = new ReadPhilFile(globaldata->inputFileName);     
+                       read = new ReadOTUFile(globaldata->inputFileName);      
                        read->read(&*globaldata); 
                
                        input = globaldata->ginput;
@@ -61,7 +61,7 @@ int HeatMapCommand::execute(){
                        order = SharedList->getSharedOrderVector();
                }else if (format == "list") {
                        //you are using just a list file and have only one group
-                       read = new ReadPhilFile(globaldata->inputFileName);     
+                       read = new ReadOTUFile(globaldata->inputFileName);      
                        read->read(&*globaldata); 
                        
                        ordersingle = globaldata->gorder;