broke up globaldata and moved error checking and help into commands

[mothur.git] / heatmap.h

diff --git a/heatmap.h b/heatmap.h
index 528c96416211a223e710467dd6baeb4cdb063c8f..56a56e4e841b4f258f5ab4f183db96acd7d6f268 100644 (file)
--- a/heatmap.h
+++ b/heatmap.h
@@ -9,33 +9,27 @@
  *
  */
 
-using namespace std;
-
-#include "ordervector.hpp"
 #include "rabundvector.hpp"
 #include "sharedrabundvector.h"
-#include "sharedordervector.h"
 #include "datavector.hpp"
 #include "globaldata.hpp"
-#include "sharedutilities.h"
 
 /***********************************************************************/
 
 class HeatMap {
        
        public:
-               HeatMap();
-               ~HeatMap(){ delete util; };
+               HeatMap(string, string);
+               ~HeatMap(){};
        
-               void getPic(OrderVector*);
-               void getPic(SharedOrderVector*);
+               void getPic(RAbundVector*);
+               void getPic(vector<SharedRAbundVector*>);
 
        private:
                void sortSharedVectors(vector<SharedRAbundVector*>& );
                void printLegend(int, float);
 
                GlobalData* globaldata;
-               SharedUtil* util;
                string format, sorted, groupComb, scaler;
                ofstream outsvg;
                        
@@ -47,3 +41,4 @@ class HeatMap {
 
 
 
+