started heatmap command

[mothur.git] / heatmap.h

diff --git a/heatmap.h b/heatmap.h
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+#ifndef HEATMAP_H
+#define HEATMAP_H
+/*
+ *  heatmap.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 3/25/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+using namespace std;
+
+#include "ordervector.hpp"
+#include "sabundvector.hpp"
+#include "sharedsabundvector.h"
+#include "sharedordervector.h"
+#include "datavector.hpp"
+#include "globaldata.hpp"
+
+/***********************************************************************/
+
+class HeatMap {
+       
+       public:
+               HeatMap();
+               ~HeatMap(){};
+       
+               void getPic(OrderVector*);
+               void getPic(SharedOrderVector*);
+
+       private:
+               void getSharedVectors(SharedOrderVector*);
+               void setGroups();
+       
+               GlobalData* globaldata;
+               vector<SharedSAbundVector> lookup;
+               SAbundVector sabund;
+               string format;
+
+                       
+};
+
+#endif
+