added heatmap command

[mothur.git] / heatmap.h

diff --git a/heatmap.h b/heatmap.h
index fe79e43c81ced356e29a8919bd58ddfac7acbb6c..0678aa0827b8765f72c5012dfc3fa18522d995a6 100644 (file)
--- a/heatmap.h
+++ b/heatmap.h
@@ -12,8 +12,8 @@
 using namespace std;
 
 #include "ordervector.hpp"
-#include "sabundvector.hpp"
-#include "sharedsabundvector.h"
+#include "rabundvector.hpp"
+#include "sharedrabundvector.h"
 #include "sharedordervector.h"
 #include "datavector.hpp"
 #include "globaldata.hpp"
@@ -31,15 +31,21 @@ class HeatMap {
 
        private:
                void getSharedVectors(SharedOrderVector*);
-               void setGroups();
        
                GlobalData* globaldata;
-               vector<SharedSAbundVector> lookup;
-               SAbundVector sabund;
+               vector<SharedRAbundVector*> lookup;
+               RAbundVector rabund;
                string format;
+               ofstream outsvg;
+               map<int, string> colorScale;
+               map<int, string>::iterator it;
+               string groupComb;
 
                        
 };
+/***********************************************************************/
 
 #endif
 
+
+