chimeracheck method added

[mothur.git] / heatmap.cpp

diff --git a/heatmap.cpp b/heatmap.cpp
index 3ed606f17be79024c72cf9834f499128a06d6a2e..52a29e79e70dde14806e79960de618b7c3b4e4bf 100644 (file)
--- a/heatmap.cpp
+++ b/heatmap.cpp
@@ -18,11 +18,7 @@ HeatMap::HeatMap(string sort, string scale){
                scaler = scale;
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the HeatMap class Function HeatMap. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the HeatMap class function HeatMap. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "HeatMap", "HeatMap");
                exit(1);
        }
 }
@@ -65,7 +61,7 @@ void HeatMap::getPic(RAbundVector* rabund) {
                openOutputFile(filenamesvg, outsvg);
                
                //svg image
-               outsvg << "<svg width=\"100%\" height=\"100%\" viewBox=\"0 0 " + toString(300) + " " + toString((rabund->getNumBins()*5 + 120))  + "\">\n";
+               outsvg << "<svg xmlns:svg=\"http://www.w3.org/2000/svg\" xmlns=\"http://www.w3.org/2000/svg\" width=\"100%\" height=\"100%\" viewBox=\"0 0 " + toString(300) + " " + toString((rabund->getNumBins()*5 + 120))  + "\">\n";
                outsvg << "<g>\n";
                
                //white backround
@@ -91,11 +87,7 @@ void HeatMap::getPic(RAbundVector* rabund) {
                
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the HeatMap class Function getPic. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the HeatMap class function getPic. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "HeatMap", "getPic");
                exit(1);
        }
 }
@@ -145,7 +137,7 @@ void HeatMap::getPic(vector<SharedRAbundVector*> lookup) {
                openOutputFile(filenamesvg, outsvg);
                
                //svg image
-               outsvg << "<svg width=\"100%\" height=\"100%\" viewBox=\"0 0 " + toString(lookup.size() * 300) + " " + toString((lookup[0]->getNumBins()*5 + 120))  + "\">\n";
+               outsvg << "<svg xmlns:svg=\"http://www.w3.org/2000/svg\" xmlns=\"http://www.w3.org/2000/svg\" width=\"100%\" height=\"100%\" viewBox=\"0 0 " + toString(lookup.size() * 300) + " " + toString((lookup[0]->getNumBins()*5 + 120))  + "\">\n";
                outsvg << "<g>\n";
                
                //white backround
@@ -179,11 +171,7 @@ void HeatMap::getPic(vector<SharedRAbundVector*> lookup) {
 
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the HeatMap class Function getPic. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the HeatMap class function getPic. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "HeatMap", "getPic");
                exit(1);
        }
 }
@@ -263,14 +251,9 @@ void HeatMap::sortSharedVectors(vector<SharedRAbundVector*>& lookup){
                
        }
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the HeatMap class Function sortSharedVectors. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "HeatMap", "sortSharedVectors");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the HeatMap class function sortSharedVectors. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       
 }
 
 //**********************************************************************************************************************
@@ -308,14 +291,9 @@ void HeatMap::printLegend(int y, float maxbin) {
        }
        
        catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the HeatMap class Function printLegend. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+               errorOut(e, "HeatMap", "printLegend");
                exit(1);
        }
-       catch(...) {
-               cout << "An unknown error has occurred in the HeatMap class function printLegend. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       
 }