fixed some bugs and added mgcluster command

[mothur.git] / hclustercommand.cpp

diff --git a/hclustercommand.cpp b/hclustercommand.cpp
index dbc0e1bb9917b0d2cfdebfa83a5a97a17b6eb905..3c79f649301f9e049e5ff8cf3eff454bf97fb4c4 100644 (file)
--- a/hclustercommand.cpp
+++ b/hclustercommand.cpp
@@ -176,7 +176,6 @@ int HClusterCommand::execute(){
                
                print_start = true;
                start = time(NULL);
-               
        
                ifstream in;
                openInputFile(distfile, in);
@@ -184,7 +183,6 @@ int HClusterCommand::execute(){
                float distance;
                
                cluster = new HCluster(rabund, list);
-               bool clusteredSomething;
                vector<seqDist> seqs; seqs.resize(1); // to start loop
                exitedBreak = false;  //lets you know if there is a distance stored in next
        
@@ -207,7 +205,7 @@ int HClusterCommand::execute(){
                                
        //cout << "before cluster update" << endl;
                                if (seqs[i].seq1 != seqs[i].seq2) {
-                                       clusteredSomething = cluster->update(seqs[i].seq1, seqs[i].seq2, seqs[i].dist);
+                                       cluster->update(seqs[i].seq1, seqs[i].seq2, seqs[i].dist);
                                        
                                        float rndDist = roundDist(seqs[i].dist, precision);
                //cout << "after cluster update clusterSomething = " << clusteredSomething << " rndDist = " << rndDist << " rndPreviousDist = " << rndPreviousDist << endl;                     
@@ -301,7 +299,6 @@ void HClusterCommand::printData(string label){
 
 }
 //**********************************************************************************************************************
-
 vector<seqDist> HClusterCommand::getSeqs(ifstream& filehandle){
        try {
                string firstName, secondName;