fixed some bugs and added mgcluster command

[mothur.git] / hcluster.h

diff --git a/hcluster.h b/hcluster.h
index 6b2862b7919b8d74e7a28a0442ef10bceb863db0..dd4c679123f12d90fbc2ca1daaae5045be9a1dc1 100644 (file)
--- a/hcluster.h
+++ b/hcluster.h
@@ -22,8 +22,9 @@ class HCluster {
 public:
        HCluster(RAbundVector*, ListVector*);
        ~HCluster(){};
-    bool update(int, int, float);
-       //string getTag();
+    void update(int, int, float);
+       void setMapWanted(bool m); 
+       map<string, int> getSeqtoBin()  {  return seq2Bin;      }
 
 protected:     
        void clusterBins();
@@ -32,6 +33,7 @@ protected:
        int makeActive();
        void printInfo();
        void updateArrayandLinkTable();
+       void updateMap();
                
        RAbundVector* rabund;
        ListVector* list;
@@ -43,10 +45,11 @@ protected:
        map<int, int>::iterator it2;
        
        int numSeqs;
-       
        int smallRow;
        int smallCol;
        float smallDist;
+       map<string, int> seq2Bin;
+       bool mapWanted;
        
 };