changed groupfile in classify.seqs to reflect multiple fasta files

[mothur.git] / hcluster.cpp

diff --git a/hcluster.cpp b/hcluster.cpp
index 07deaa5991c94627fa2e02a88e3b10b2729e290e..9466483c779ce0b32698c8469c6224ea3c63b724 100644 (file)
--- a/hcluster.cpp
+++ b/hcluster.cpp
@@ -452,7 +452,7 @@ vector<seqDist> HCluster::getSeqsAN(){
                        if (distance != -1) { //-1 means skip me
                                seqDist temp(firstName, secondName, distance);
                                sameSeqs.push_back(temp);
-                       }
+                       }else{ distance = 10000; }
                }
                
                if (mergedMinDist < distance) { //get minimum distance from mergedMin