moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / hamming.cpp

diff --git a/hamming.cpp b/hamming.cpp
deleted file mode 100644 (file)
index 6131bfc..0000000
--- a/hamming.cpp
+++ /dev/null
@@ -1,43 +0,0 @@
-/*
- *  hamming.cpp
- *  Mothur
- *
- *  Created by westcott on 12/15/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "hamming.h"
-
-/***********************************************************************/
-EstOutput Hamming::getValues(vector<SharedRAbundVector*> shared) {
-       try {
-               data.resize(1,0);
-               
-               int numA = 0;
-               int numB = 0;
-               int numShared = 0;
-               
-               //calc the 2 denominators
-               for (int i = 0; i < shared[0]->getNumBins(); i++) { 
-                       int A = shared[0]->getAbundance(i);
-                       int B = shared[1]->getAbundance(i);
-                       
-                       if (A != 0) { numA++; }
-                       if (B != 0) { numB++; }
-                       if ((A != 0) && (B != 0)) { numShared++; }
-               }
-               
-               data[0] = numA + numB - (2 * numShared);
-               
-               if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-               
-               return data;
-       }
-       catch(exception& e) {
-               m->errorOut(e, "Hamming", "getValues");
-               exit(1);
-       }
-}
-/***********************************************************************/
-