started shared utilities, updates to venn and heatmap added tree.groups command

[mothur.git] / groupmap.h

diff --git a/groupmap.h b/groupmap.h
index de69ca4d94c5e98342c666c7de0a768f61a3b267..d69699d382530f688a0f6023f90b1ffed1bdfffe 100644 (file)
--- a/groupmap.h
+++ b/groupmap.h
@@ -9,11 +9,7 @@
  *
  */
 
-#include <map>
-#include <string>
-#include <iostream>
-#include <fstream>
-#include "utilities.hpp"
+#include "mothur.h"
 
 /* This class is a representation of the groupfile.  It is used by all the shared commands to determine what group a 
        certain sequence belongs to. */
@@ -25,6 +21,7 @@ public:
        ~GroupMap();
        void readMap();
        int getNumGroups();
+       bool isValidGroup(string);  //return true if string is a valid group
        string getGroup(string);
        void setGroup(string, string);
        vector<string> namesOfGroups;