added rename.seqs command.

[mothur.git] / groupmap.h

diff --git a/groupmap.h b/groupmap.h
index bdcd61e7c763cc10e31088d3292064887a8070a8..5397e02e7c158e5074a7f8e626d813561cc6d9b6 100644 (file)
--- a/groupmap.h
+++ b/groupmap.h
@@ -40,6 +40,9 @@ public:
        vector<string> getNamesSeqs(vector<string>); //get names of seqs belonging to a group or set of groups
        int getNumSeqs(string); //return the number of seqs in a given group
     int getCopy(GroupMap*);
        vector<string> getNamesSeqs(vector<string>); //get names of seqs belonging to a group or set of groups
        int getNumSeqs(string); //return the number of seqs in a given group
     int getCopy(GroupMap*);

+    int renameSeq(string, string);
+    int print(ofstream&);
+    int print(ofstream&, vector<string>); //print certain groups

     
     
     map<string, int> groupIndex;  //groupname, vectorIndex in namesOfGroups. - used by collectdisplays and libshuff commands.
     
     
     map<string, int> groupIndex;  //groupname, vectorIndex in namesOfGroups. - used by collectdisplays and libshuff commands.