added ordergroup parameter to read.otu

[mothur.git] / globaldata.hpp

diff --git a/globaldata.hpp b/globaldata.hpp
index 35415c70c874039c99c758c24a77b7b43eeb6079..301527a3f9b1e07d7f82ecbd4a04778ec0f39c37 100644 (file)
--- a/globaldata.hpp
+++ b/globaldata.hpp
@@ -58,6 +58,7 @@ public:
        string getNameFile();   //do we need this?
        string getGroupFile();  //do we need this?
        string getOrderFile();
+       string getOrderGroupFile();
        string getTreeFile();
        string getSharedFile();
        string getFormat();     //do we need this?
@@ -73,6 +74,7 @@ public:
        void setSabundFile(string);
        void setSharedFile(string);
        void setOrderFile(string file);
+       void setOrderGroupFile(string file);
        void setFormat(string); //do we need this?
        
        NameAssignment* nameMap;
@@ -85,7 +87,7 @@ public:
        
 private:
        MothurOut* m;
-       string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, treefile, sharedfile, format, distfile;
+       string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, treefile, sharedfile, format, distfile, ordergroup;
 
        static GlobalData* _uniqueInstance;
        GlobalData( const GlobalData& ); // Disable copy constructor