fixed valid parameters to include shared parameter for read.shared command.

[mothur.git] / globaldata.cpp

diff --git a/globaldata.cpp b/globaldata.cpp
index 015293d727e5e94c51f1ce2bbe5a7ff6c6a7aee9..b1ac4e87b986cee6380c997c6c40590b089067f7 100644 (file)
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -185,6 +185,7 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
                
                //set format for shared
                if ((listfile != "") && (groupfile != "")) { format = "shared"; }
+               if ((phylipfile != "") && (groupfile != "")) { format = "matrix"; }
                                
                //input defaults for calculators
                if (commandName == "collect.single") {