pat's edits of screen.seqs and summary.seqs

[mothur.git] / globaldata.cpp

diff --git a/globaldata.cpp b/globaldata.cpp
index ec937eac09d96bc04bdce2f1f0f2fcf9c08bc3ce..62641beab3e0603715ff4ff57c6a2d7326a22421 100644 (file)
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -141,7 +141,7 @@ void GlobalData::parseGlobalData(string commandString, string optionText){
                        if (key == "nexus" )    { nexusfile = value; inputFileName = value; fileroot = value; format = "nexus";         }
                        if (key == "clustal" )  { clustalfile = value; inputFileName = value; fileroot = value; format = "clustal"; } 
                        if (key == "tree" )             { treefile = value; inputFileName = value; fileroot = value; format = "tree";           } 
-                       if (key == "shared" )   { sharedfile = value; inputFileName = value; fileroot = value; format = "sharedfile";   } 
+                       if (key == "shared" )   { sharedfile = value; inputFileName = value; fileroot = value; format = "sharedfile";   }
                        if (key == "name" )             { namefile = value;             }
                        if (key == "order" )    { orderfile = value;    }
                        if (key == "group" )    { groupfile = value;    }
@@ -413,7 +413,7 @@ void GlobalData::clear() {
        processors              =       "1";
        size            =   "0";
        search                  =       "kmer";
-       ksize                   =       "7";
+       ksize                   =       "8";
        align                   =       "needleman";
        match                   =       "1.0";
        mismatch                =       "-1.0";
@@ -449,7 +449,7 @@ void GlobalData::reset() {
        processors              =       "1";
        size            =   "0";
        search                  =       "kmer";
-       ksize                   =       "7";
+       ksize                   =       "8";
        align                   =       "needleman";
        match                   =       "1.0";
        mismatch                =       "-1.0";