changed all shared commands so that they read the shared file generated by the read...

[mothur.git] / globaldata.cpp

diff --git a/globaldata.cpp b/globaldata.cpp
index ae1b0e2ebbb463fefc32a2f8ad3fd1816b01109d..494b664fb841389aff6dca6305963d68a1a5a8cf 100644 (file)
--- a/globaldata.cpp
+++ b/globaldata.cpp
@@ -290,11 +290,13 @@ string GlobalData::getScale()                     {       return scale;           }
 string GlobalData::getEnds()                   {   return ends;                }
 string GlobalData::getProcessors()             {       return processors;      }
 
-void GlobalData::setListFile(string file)      {       listfile = file;        inputFileName = file;}
-void GlobalData::setRabundFile(string file)    {       rabundfile = file;      inputFileName = file;}
-void GlobalData::setSabundFile(string file)    {       sabundfile = file;      inputFileName = file;}
-void GlobalData::setPhylipFile(string file)    {       phylipfile = file;    inputFileName = file;}
-void GlobalData::setColumnFile(string file)    {       columnfile = file;    inputFileName = file;}
+void GlobalData::setListFile(string file)              {       listfile = file;        inputFileName = file;}
+void GlobalData::setGroupFile(string file)             {       groupfile = file;       }
+void GlobalData::setRabundFile(string file)            {       rabundfile = file;      inputFileName = file;}
+void GlobalData::setSabundFile(string file)            {       sabundfile = file;      inputFileName = file;}
+void GlobalData::setPhylipFile(string file)            {       phylipfile = file;    inputFileName = file;}
+void GlobalData::setColumnFile(string file)            {       columnfile = file;    inputFileName = file;}
+void GlobalData::setSharedFile(string file)            {       sharedfile = file;      inputFileName = file; fileroot = file;}
 void GlobalData::setNameFile(string file)              {       namefile = file;                }
 void GlobalData::setFormat(string Format)              {       format = Format;                }
 void GlobalData::setRandomTree(string Random)  {       randomtree = Random;    }