adding labels to list file.

[mothur.git] / getsharedotucommand.cpp

diff --git a/getsharedotucommand.cpp b/getsharedotucommand.cpp
index 1074d323e9aaeae08b69a2d546fdb8cae544d330..9302d1d21dfc52dbe295754e38aa86de55e0a4cc 100644 (file)
--- a/getsharedotucommand.cpp
+++ b/getsharedotucommand.cpp
@@ -431,6 +431,7 @@ int GetSharedOTUCommand::process(ListVector* shared) {
                int num = 0;
                                
                //go through each bin, find out if shared
+        vector<string> binLabels = shared->getLabels();
                for (int i = 0; i < shared->getNumBins(); i++) {
                        if (m->control_pressed) { outNames.close(); m->mothurRemove(outputFileNames); return 0; }
                        
@@ -452,7 +453,7 @@ int GetSharedOTUCommand::process(ListVector* shared) {
                                //find group
                                string seqGroup = groupMap->getGroup(name);
                                if (output != "accnos") {
-                                       namesOfSeqsInThisBin.push_back((name + "|" + seqGroup + "|" + toString(i+1)));
+                                       namesOfSeqsInThisBin.push_back((name + "|" + seqGroup + "|" + binLabels[i]));
                                }else {  namesOfSeqsInThisBin.push_back(name);  }
                                
                                if (seqGroup == "not found") { m->mothurOut(name + " is not in your groupfile. Please correct."); m->mothurOutEndLine(); exit(1);  }
@@ -691,7 +692,7 @@ int GetSharedOTUCommand::process(vector<SharedRAbundVector*>& lookup) {
                        
                        for(int j = 0; j < lookup.size(); j++) {
                                string seqGroup = lookup[j]->getGroup();
-                string name = m->currentBinLabels[i];
+                string name = m->currentSharedBinLabels[i];
                                
                 if (lookup[j]->getAbundance(i) != 0) {
                     if (output != "accnos") {