added template=self capability to chimers.slayer, worked on corr.axes and added accno...

[mothur.git] / getseqscommand.h

diff --git a/getseqscommand.h b/getseqscommand.h
index b249072e41aba8b7ff0501c1fc946b90c48dfd22..aef789aa7dd80a656a66c3061a2e8cadd1fe081b 100644 (file)
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -29,7 +29,7 @@ class GetSeqsCommand : public Command {
        private:
                set<string> names;
                vector<string> outputNames;
-               string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
+               string accnosfile, accnosfile2, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
                bool abort, dups;
                map<string, vector<string> > outputTypes;
                
@@ -41,6 +41,7 @@ class GetSeqsCommand : public Command {
                int readList();
                int readTax();
                int readQual();
+               int compareAccnos();
                
 };