added count file to trim.seqs, get.groups, get.lineage, get.seqs, heatmap.sim, list...

[mothur.git] / getseqscommand.h

diff --git a/getseqscommand.h b/getseqscommand.h
index c71b5f2804a71190c6919f0dc80bf80d32f15508..60e471eebf7865d5924406ef7c720c3bdcdf4648 100644 (file)
--- a/getseqscommand.h
+++ b/getseqscommand.h
@@ -35,7 +35,7 @@ class GetSeqsCommand : public Command {
        private:
                set<string> names;
                vector<string> outputNames;
-               string accnosfile, accnosfile2, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
+               string accnosfile, accnosfile2, fastafile, namefile, countfile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
                bool abort, dups;
     
         //for debug
@@ -44,6 +44,7 @@ class GetSeqsCommand : public Command {
                int readFasta();
                int readName();
                int readGroup();
+        int readCount();
                int readAlign();
                int readList();
                int readTax();