sped up the remove.seqs and remove.lineage and get.seqs and get.lineage. fixed bug...

[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index 6d4bff2c38cf495a843b9c57ff7eff802a7ee72f..ce820fea0da0bfecc47db0126c9c5c70425c74e6 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -539,15 +539,7 @@ int GetSeqsCommand::readName(){
                        if (dups) { hold = secondCol; }
                        
                        vector<string> parsedNames;
-                       //parse second column saving each name
-                       while (secondCol.find_first_of(',') != -1) { 
-                               name = secondCol.substr(0,secondCol.find_first_of(','));
-                               secondCol = secondCol.substr(secondCol.find_first_of(',')+1, secondCol.length());
-                               parsedNames.push_back(name);
-                       }
-                       
-                       //get name after last ,
-                       parsedNames.push_back(secondCol);
+                       m->splitAtComma(secondCol, parsedNames);
                        
                        vector<string> validSecond;
                        for (int i = 0; i < parsedNames.size(); i++) {