fixes while testing

[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index 34788b8897cca88fa06ba46a5b37f88b70df70c0..b48ba28709acfb2b0f1355743c5a860cee1c8529 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -26,6 +26,7 @@ vector<string> GetSeqsCommand::getValidParameters(){
 //**********************************************************************************************************************
 GetSeqsCommand::GetSeqsCommand(){      
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;