fixed trim.seqs bug with qtrim parameter and added num=1 special case to database...

[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index a16accbb8ac724b1fce6579a7bcad9b2f5b261c7..a191515cb601408b2c7d884b895f7e14d668d798 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -190,6 +190,7 @@ GetSeqsCommand::GetSeqsCommand(string option)  {
                        
                        accnosfile2 = validParameter.validFile(parameters, "accnos2", true);
                        if (accnosfile2 == "not open") { abort = true; }
+                       if (accnosfile2 == "not found") { accnosfile2 = ""; }
                        
                        fastafile = validParameter.validFile(parameters, "fasta", true);
                        if (fastafile == "not open") { abort = true; }