changed groupfile in classify.seqs to reflect multiple fasta files

[mothur.git] / getseqscommand.cpp

diff --git a/getseqscommand.cpp b/getseqscommand.cpp
index f40c89b3fb3eff837729bc203055d11ef1a3c5a5..7fdf6ed7084463b4e875c8fa01a4e4f9b13db513 100644 (file)
--- a/getseqscommand.cpp
+++ b/getseqscommand.cpp
@@ -123,6 +123,7 @@ GetSeqsCommand::GetSeqsCommand(string option)  {
                        
                        int okay = 2;
                        if (outputDir != "") { okay++; }
+                       if (inputDir != "")     { okay++; }
                        
                        if (parameters.size() > okay) { m->mothurOut("You may only enter one of the following: fasta, name, group, alignreport or listfile."); m->mothurOutEndLine(); abort = true;  }
                }